PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03895.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 328aa    MW: 37374.2 Da    PI: 6.3188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03895.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20131180255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a++k++g
  Jcr4S03895.40 131 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDKAALKFKG 180
                    7********.**********94....45************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-33130189IPR001471AP2/ERF domain
CDDcd000181.05E-34131189No hitNo description
PfamPF008471.2E-13131180IPR001471AP2/ERF domain
PROSITE profilePS5103224.895131188IPR001471AP2/ERF domain
SMARTSM003802.4E-39131194IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22131189IPR016177DNA-binding domain
PRINTSPR003671.1E-11132143IPR001471AP2/ERF domain
PRINTSPR003671.1E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MWLHVQEKCN RSFLHFLLQI LIVEDPFPGA RVTYQVMLIK VDRRHGKRPL PSEASEEKEK  60
EHQEFPSYPS SWSETDMSAM VSALSQVIAT STDDNPTSVQ STQVTAQQTL VKEELDQSQP  120
TLDQENTRRR HYRGVRQRPW GKWAAEIRDP KKAARVWLGT FDTAEDAALA YDKAALKFKG  180
TKAKLNFPER VQGKPEFSYF MTSSGDSSSA LAPEQNPMAA AASAPSRHYL PPPPSFPQEA  240
YPDLLQYAQI LSSNDANFQY YTSNLFNQQS YAPPYYSSTF SSQQHQQQQE QQQQQQQQQN  300
LTRFSPRFDS SSSSDYLEHG KDSSNPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-27130191163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-27130191466ATERF1
3gcc_A6e-27130191466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF5188810.0JF518881.1 Jatropha curcas AP2/ERF transcription factor (AP2/ERF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295725.10.0ethylene-responsive transcription factor ERF113
SwissprotQ9LYU32e-52EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLR9QAL10.0R9QAL1_JATCU; AP2/ERF transcription factor
STRINGPOPTR_0001s12990.14e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-42related to AP2 6l